Table 1 Summary statistics of the Cerasus speciosa genome assembly and other closely related species genomes.
From: A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa
Species | Assembly level | Total number of scaffolds | Total length (Mbp) | Maximum scaffold size (Mbp) | Gaps | Contig N50 (Mbp) | Scaffold N50 (Mbp) | GC (%) | Reference | |
|---|---|---|---|---|---|---|---|---|---|---|
Cerasus speciosa | Complete genome | 8 | 269.3 | 49.7 | 0 | 32.0 | 32.0 | 38.1 | This study | |
Cerasus × yedoensis ‘Somei-yoshino' | Total | Contig | 4,571* | 690.1 | 11.1 | 0 | 0.9 | 37.9 | CYE_r3.1 (Shirasawa K, et al., DNA Res. 2019) | |
Cerasus itosakura haplotype | Contig | 2,292* | 350.1 | 11.1 | 0 | 1.2 | 37.8 | |||
Cerasus speciosa haplotype | Contig | 2,279* | 340.0 | 6.7 | 0 | 0.8 | 38.1 | |||
Cerasus campanulata | Chromosome | 280 | 282.3 | 50.8 | 22 | 12.0 | 30.6 | 39.0 | Pcampanulata_V1 (Hu Y, et al., Sci Data. 2023) | |
Cerasus avium (Big Star) | Chromosome | 4,463 | 271.6 | 48.3 | 24,670 | 0.0 | 0.2 | 37.5 | Prunus_avium_v1.0 (Pinosio S, et al., Plant J. 2020) | |
Prunus mume | Chromosome | 8,625 | 233.9 | 42.1 | 15,597 | 0.0 | 0.6 | 37.5 | P.mume_V1.0 (Zhang Q, et al., Nat Commun. 2012) | |
Prunus persica (Lovell) | Chromosome | 191 | 227.4 | 47.9 | 2,339 | 0.3 | 27.4 | 37.5 | Prunus_persica_NCBIv2 (Verde I, et al., BMC Genomics. 2017) | |
