Table 3 Summary of repetitive contents in C. speciosa.
From: A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa
Class | Subclass | Count | Total length | %masked |
|---|---|---|---|---|
LTRs | Copia | 9050 | 5188582 | 1.93% |
Gypsy | 12909 | 7194070 | 2.67% | |
LARD | 3089 | 1532117 | 0.57% | |
TRIM | 6979 | 18181153 | 6.75% | |
others | 56077 | 31328549 | 11.64% | |
TIRs | CACTA | 7661 | 2469606 | 0.92% |
MITE | 8961 | 2286866 | 0.85% | |
Mutator | 12591 | 3628708 | 1.35% | |
PIF_Harbinger | 4595 | 1341362 | 0.50% | |
Tc1_Mariner | 184 | 62435 | 0.02% | |
hAT | 6578 | 2380936 | 0.88% | |
polinton | 934 | 257794 | 0.10% | |
others | 48980 | 24601747 | 9.14% | |
non-LTR | LINEs | 7900 | 2685864 | 1.00% |
SINEs | 2205 | 582462 | 0.22% | |
others | 1027 | 975046 | 0.36% | |
non-TIR | Helitron | 11813 | 4405813 | 1.64% |
others | 25 | 4330 | 0.00% | |
Unclassified | 57765 | 19691860 | 7.31% | |
Total | 259323 | 128799300 | 47.83% |
