Fig. 2
From: Chromosome-level genome assembly of the crofton weed (Ageratina adenophora)
Overview of A. adenophora genome. (a) The A. adenophora karyotype. DAPI-stained metaphase chromosomes are shown in the left two parts and demonstrated 51 chromosomes in A. adenophora. Three homologous chromosomes signal was detected by the hybridization sites of 18S (red) and the 5S (green) rDNA probes and shown in the right two parts. Bar 10 μm. (b) Smudgeplots analysis based on density of k-mer for A. adenophora. (c) Genome size estimation by utilizing flow cytometry. The rice with genome size 385.7 Mb was used as the standard sample. The fluorescence intensity fold between A. adenophora and rice was ~5.1, and the genome size of A. adenophora was estimated to be 3.96 Gb. (d) Chromosomal features of A. adenophora genomes: a chromosome ideograms. b Transposable element in each chromosome. c Gene density content in each chromosome. d 5 mC DNA methylation levels obtained from the Pacbio HiFi data. e SNP density. f InDel density. g gene expression levels. (e) BUSCO scores of the three haplotypes of A. adenophora.
