Table 1 Genome assembly and annotation statistics for A. adenophora.
From: Chromosome-level genome assembly of the crofton weed (Ageratina adenophora)
Items | Haplotype A1 | Haplotype A2 | Haplotype B | All genome |
|---|---|---|---|---|
Assembly genome size (Mb) | 1,159,218,177 | 1,170,918,390 | 1,220,244,402 | 3,818,295,199 |
Contig N50 (bp) | 1,085,944 | 1,104,349 | 1,725,179 | 1,222,948 |
Contig N90 (bp) | 195,330 | 169,596 | 282,767 | 169,891 |
Largest contig (Mb) | 7.91 | 11.78 | 10.56 | 11.78 |
Scaffold N50 (Mb) | 68.59 | 70.8 | 72.65 | 70.8 |
Scaffold N90 (Mb) | 52.74 | 53.6 | 57.92 | 49.77 |
Largest scaffold (Mb) | 90.87 | 94.7 | 93.82 | 94.7 |
Protein coding genes | 37865 | 37353 | 43331 | 123134 |
Repeat(%) | 76 | 76.34 | 80.55 | 76.44 |
Genome BUSCOs (%) | 88.04 | 86.8 | 90.52 | 97.71 |
Gene BUSCOs (%) | 90.09 | 87.86 | 91.88 | 99.19 |
LTR Assembly Index | 18.73 | 18.29 | 18.58 | 18.53 |
Consensus quality | 35.9 | 35.63 | 36.36 | 35.43 |
