Table 2 Identification of antimicrobial resistance genes associated with Pseudomonas fluorescence (bin 6).
From: Shotgun and Hi-C Sequencing Datasets for Binning Wheat Rhizosphere Microbiome
Contig id | Gene symbol | Sequence name | Element type | Class | Accession of closest sequence | Name of closest sequence |
|---|---|---|---|---|---|---|
k141_1411175 | emhC | efflux RND transporter outer membrane subunit (EmhC) | AMR | EFFLUX | AAQ92182.1 | efflux RND transporter outer membrane subunit EmhC |
k141_2293707 | vanR-O | VanO-type vancomycin resistance response regulator transcription factor (VanR) | AMR | GLYCOPEPTIDE | WP_063856729.1 | VanO-type vancomycin resistance response regulator transcription factor VanR |
k141_2976538 | copA | laccase-like oxidase (CopA) | STRESS | COPPER | AAP88295.1 | laccase-like oxidase CopA |
k141_3491678 | vanR-O | VanO-type vancomycin resistance response regulator transcription factor (VanR) | AMR | GLYCOPEPTIDE | WP_063856729.1 | VanO-type vancomycin resistance response regulator transcription factor VanR |
k141_4597424 | emhA | efflux RND transporter periplasmic adaptor subunit (EmhA) | AMR | EFFLUX | AAY90617.2 | efflux RND transporter periplasmic adaptor subunit EmhA |
k141_474788 | catB1 | type B-1 chloramphenicol O-acetyltransferase (CatB1) | AMR | PHENICOL | WP_010974114.1 | type B-1 chloramphenicol O-acetyltransferase CatB1 |
k141_4829099 | emhB | efflux RND transporter permease subunit (EmhB) | AMR | EFFLUX | ACO06752.1 | efflux RND transporter permease subunit EmhB |
k141_6068478 | vanR-O | VanO-type vancomycin resistance response regulator transcription factor (VanR) | AMR | GLYCOPEPTIDE | WP_063856729.1 | VanO-type vancomycin resistance response regulator transcription factor VanR |
k141_615145 | vanR-O | VanO-type vancomycin resistance response regulator transcription factor (VanR) | AMR | GLYCOPEPTIDE | WP_063856729.1 | VanO-type vancomycin resistance response regulator transcription factor VanR |
k141_6832220 | cueA | copper resistance metal-translocating P1-type ATPase (CueA) | STRESS | COPPER | AAM88668.1 | copper resistance metal-translocating P1-type ATPase CueA |
