Table 6 Details of structural and sequence variations between the two assemblies.
Variation_type | Count | Length_hap1 | Length_hap2 |
|---|---|---|---|
Syntenic regions | 1946 | 930429859 | 933220504 |
Inversions | 214 | 173602170 | 179045073 |
Translocations | 2810 | 25628118 | 25466995 |
Duplications (hap1) | 606 | 5530902 | — |
Duplications (hap2) | 2237 | — | 9723891 |
Not aligned (hap1) | 5069 | 300485152 | — |
Not aligned (hap2) | 6795 | — | 274358289 |
SNPs | 9487343 | 9487343 | 9487343 |
Insertions | 337977 | — | 5279269 |
Deletions | 347207 | — | 5438063 |
Copygains | 244 | — | 3435634 |
Copylosses | 242 | — | 1848175 |
Highly diverged | 64150 | 706404286 | 713036945 |
