Table 4 Statistics of repetitive sequences in P. managuensis assembly.

From: Chromosome-level genome assembly of Jaguar guapote (Parachromis manguensis) by massive parallel sequencing

Type

Length (bp)

% in genome

Transposable elements

LINE

88,419,952

9.86

LTR

30,121,487

3.36

SINE

15,397,702

1.72

DNA

140,258,935

15.64

MITE

20,429,993

2.28

RC

3,137,261

0.35

Total

297,765,330

33.21

Tandem Repeats

6,221,436

0.69

SSR

1,413,745

0.16

Other

3,235,558

0.36

Unknown

14,675,851

1.64

Total

325,584,473

36.31

  1. Note: LINE, long interspersed nuclear elements; SINE, short interspersed nuclear elements; LTR, long terminal repeat; MITE, miniature inverted repeat transposable element.
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