Table 3 Performance comparison (DSC) of 10 gastrointestinal tract segments segmentation using seven recent segmentation methods.

From: A comprehensive dataset of magnetic resonance enterography images with intestinal segment annotations

method

nnUNet (2D)

nnUNetV2 (2D)

ResUNet (2D)

UCTransNet (2D)

nnUNet (3D)

nnUNetV2 (3D)

CoTr (3D)

Stomach

0.934 ± 0.054

0.939 ± 0.046

0.801 ± 0.101

0.908 ± 0.069

0.956 ± 0.048

0.962 ± 0.041

0.938 ± 0.067

Duodenum

0.798 ± 0.080

0.805 ± 0.068

0.603 ± 0.105

0.739 ± 0.093

0.858 ± 0.069

0.865 ± 0.062

0.830 ± 0.068

Small Intestine

0.889 ± 0.033

0.892 ± 0.035

0.743 ± 0.064

0.853 ± 0.042

0.926 ± 0.031

0.931 ± 0.026

0.906 ± 0.035

Appendix

0.125 ± 0.233

0.177 ± 0.278

0.209 ± 0.388

0.126 ± 0.239

0.151 ± 0.253

0.479 ± 0.469

0.091 ± 0.188

Cecum

0.425 ± 0.263

0.452 ± 0.254

0.127 ± 0.173

0.370 ± 0.222

0.602 ± 0.269

0.600 ± 0.280

0.410 ± 0.277

Ascending Colon

0.766 ± 0.157

0.759 ± 0.164

0.609 ± 0.181

0.699 ± 0.175

0.823 ± 0.152

0.834 ± 0.152

0.772 ± 0.186

Transverse Colon

0.757 ± 0.137

0.769 ± 0.128

0.523 ± 0.161

0.687 ± 0.151

0.798 ± 0.166

0.822 ± 0.150

0.765 ± 0.180

Descending Colon

0.725 ± 0.138

0.719 ± 0.153

0.559 ± 0.180

0.660 ± 0.174

0.756 ± 0.173

0.780 ± 0.146

0.731 ± 0.164

Sigmoid Colon

0.654 ± 0.165

0.673 ± 0.157

0.481 ± 0.161

0.586 ± 0.172

0.731 ± 0.169

0.754 ± 0.165

0.706 ± 0.175

Rectum

0.817 ± 0.155

0.820 ± 0.139

0.697 ± 0.187

0.774 ± 0.162

0.866 ± 0.131

0.877 ± 0.144

0.849 ± 0.162

Mean

0.689 ± 0.230

0.700 ± 0.215

0.535 ± 0.170

0.640 ± 0.150

0.747 ± 0.221

0.791 ± 0.164

0.700 ± 0.246

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