Table 2 Comparison of genome assemblies in three Leuciscus species.
From: Chromosome-level genome assembly of a critically endangered species Leuciscus chuanchicus
Features | Leuciscus waleckii (2017)53 | Leuciscus waleckii (2023)20 | Leuciscus chuanchicus |
|---|---|---|---|
Estimated genome size (bp) | 896,000,000 | 1,125,030,000 | 1,105,646,060 |
Contig number | 39,398 | 6,407 | 233 |
Total length (bp) | 738,258,966 | 1,103,966,172 | 1,160,128,619 |
Contig N50 (bp) | 37,373 | 1,515,867 | 31,116,631 |
Average contig length (bp) | 18,738 | 172,603 | 4,979,093 |
Largest contig length (bp) | 303,582 | 12,092,634 | 50,979,897 |
GC contents (%) | 38.11 | 38.77 | 38.87 |
Scaffold number | 4,888 | 4,250 | 130 |
Total length (bp) | 752,538,629 | 1,105,256,174 | 1,160,198,222 |
Scaffold N50 (bp) | 21,959,719 | 40,463,192 | 43,855,677 |
Average scaffold length (bp) | 153,956 | 252,850 | 8,924,602 |
Largest scaffold length (bp) | 37,168,685 | 71,368,982 | 77,086,779 |
GC contents (%) | 37.39 | 38.69 | 38.87% |
Number of chromosomes | 24 | 25 | 25 |
Length of scaffolds anchored on chromosomes (bp) | 556,215,515 (73.91%) | 1,020,347,057 (92.32%) | 1,135,130,988 (97.84%) |
Gaps | 34,510 | 2,582 | 106 |
