Table 9 OMArk assessment statistics of proteome quality.
From: Chromosome-level genome assembly of a critically endangered species Leuciscus chuanchicus
Types | Number | Percentage | |
|---|---|---|---|
Completeness assessment (Ancestral clade used: Otophysi) | Total conserved HOGs | 16357 | — |
Completed | 14931 | 91.28% | |
single | 14306 | 87.46% | |
duplicated | 625 | 3.82% | |
expected | 96 | 0.59% | |
unexpected | 529 | 3.23% | |
Whole proteome assessment | Number of proteins in the whole proteome | 31196 | |
Consistent lineage placement | 24556 | 78.72% | |
partial hits | 3915 | 12.55% | |
fragmented | 661 | 2.12% | |
Inconsistent lineage placement | 2402 | 7.70% | |
partial hits | 1673 | 5.36% | |
fragmented | 163 | 0.52% | |
Contamination | 0 | 0.00% | |
Unknown | 4238 | 13.59% |
