Table 2 Raw sequencing reads of sorghum 654.
From: A telomere-to-telomere genome assembly of Chinese grain sorghum 654
Reads type | HiFi* | ul-ONT# | Hi-C | RNA-Seq |
|---|---|---|---|---|
Application | Denovo genome assembly | Gene annotation | ||
Platform | Revio | PromethION | NovaSeq 6000 | |
Library size | 20 kb | 100 kb | PE150 (2 × 150 bp) | |
Coverage (×) | 36.40 | 24.34 | 95.70 | / |
Total size (Gb) | 26.53 | 17.74 | 69.75 | 9.84 |
Reads number | 1,840,149 | 175,253 | 468,220,263 | 65,603,249 |
Reads N50 (bp) | 14,526 | 100,001 | PE150 | PE150 |
Mapping Software | Winnowmap2 | Bowtie2 | HISAT2 | |
Mapping rate | 99.14% | 99.98% | / | 96.84% |
