Table 11 Non-coding RNA statistical results of X. davidi.
From: Chromosome-scale assembly of the Xenocypris davidi using PacBio HiFi reads and Hi-C technologies
Type | Copy number | Average length(bp) | Total length(bp) | % of genome | |
|---|---|---|---|---|---|
miRNA | 2,009 | 105.11 | 211,175 | 0.020146 | |
tRNA | 11,325 | 76.03 | 861,093 | 0.082147 | |
rRNA | rRNA | 13,213 | 147.93 | 1,954,630 | 0.19 |
18S | 322 | 732.25 | 235,783 | 0.022493 | |
28S | 790 | 387.85 | 306,403 | 0.02923 | |
5.8S | 116 | 156.56 | 18,161 | 0.001733 | |
5S | 11,985 | 116.34 | 1,394,283 | 0.13 | |
snRNA | snRNA | 2,412 | 160.5 | 387,133 | 0.036932 |
CD-box | 249 | 152.23 | 37,906 | 0.003616 | |
HACA-box | 92 | 148.27 | 13,641 | 0.001301 | |
splicing | 2,031 | 162.25 | 329,527 | 0.031436 | |
scaRNA | 26 | 194.35 | 5,053 | 0.000482 | |
Unknown | 14 | 71.86 | 1,006 | 0.000096 | |
