Table 3 Statics of different types of sequencing reads.
From: Chromosome-scale assembly of the Xenocypris davidi using PacBio HiFi reads and Hi-C technologies
Library types | Sample | Platform | Bases (Gb) | Reads Count | Mean Length (bp) | N50 (bp) |
|---|---|---|---|---|---|---|
SMRT Bell | muscle | PacBio Sequel IIe (HiFi) | 27.86 | 1,908,298 | 14,601 | 15,148 |
Hi-C | muscle | Illumina Novaseq 6000 | 49.22 | 344,604,444 | 150 | 150 |
Short-read | muscle | Illumina Novaseq 6000 | 50.51 | 168,353,928 | 150 | 150 |
RNA-seq | muscle | Illumina Novaseq 6000 | 7.01 | 23,352,108 | 150 | 150 |
RNA-seq | heart | Illumina Novaseq 6000 | 6.33 | 21,090,726 | 150 | 150 |
RNA-seq | spleen | Illumina Novaseq 6000 | 6.48 | 21,598,661 | 150 | 150 |
RNA-seq | liver | Illumina Novaseq 6000 | 6.99 | 23,304,023 | 150 | 150 |
RNA-seq | kidney | Illumina Novaseq 6000 | 7.22 | 24,060,364 | 150 | 150 |
