Table 3 Statistics of gene prediction.
From: Chromosome-level genome assembly and annotation of the White-spotted spinefoot Siganus canaliculatus
Method | Software | Species | Gene number |
|---|---|---|---|
Ab initio | Augustus | — | 38789 |
GeneMark-ET | — | 38161 | |
Homology-based | blastn/blastx/exonerate | Danio rerio | 37191 |
Oreochromis niloticus | 49829 | ||
Oryzias latipes | 37635 | ||
Scatophagus argus | 43500 | ||
Takifugu rubripes | 47202 | ||
Transcriptome-based | stringtie/taco (RNA-seq) | — | 30416 |
gmap (Iso-seq) | — | 35972 | |
Integration | maker | — | 25323 |
