Table 2 Identification of the repetitive elements in the haplotype-resolved Camellia meiocarpa genome.
From: Haplotype-resolved genome assembly of the tetraploid Youcha tree Camellia meiocarpa Hu
Class | Haplotype A | Haplotype B | Haplotype C | Haplotype D | ||||
|---|---|---|---|---|---|---|---|---|
Length (Mp) | Percentage (%) | Length (Mp) | Percentage (%) | Length (Mp) | Percentage (%) | Length (Mp) | Percentage (%) | |
DNA | 281.49 | 9.49 | 290.03 | 9.54 | 305.90 | 10.38 | 292.14 | 9.64 |
LINE | 117.07 | 3.95 | 118.20 | 3.89 | 121.96 | 4.14 | 114.68 | 3.78 |
SINE | 5.27 | 0.18 | 4.92 | 0.16 | 4.88 | 0.17 | 5.57 | 0.18 |
LTR | 2093.89 | 70.57 | 2153.84 | 70.81 | 2042.09 | 69.31 | 2128.89 | 70.25 |
LTR-Gypsy | 1216.06 | 40.98 | 1262.03 | 41.49 | 1195.17 | 40.56 | 1251.24 | 41.29 |
LTR-Copia | 232.21 | 7.83 | 245.94 | 8.09 | 251.20 | 8.53 | 250.43 | 8.26 |
Other | 0.01 | 0.00 | 0.01 | 0.00 | 0.01 | 0.00 | 0.02 | 0.00 |
Unknown | 90.23 | 3.04 | 89.91 | 2.96 | 87.87 | 2.98 | 89.49 | 2.95 |
Total | 2470.74 | 83.27 | 2532.37 | 83.26 | 2436.82 | 82.70 | 2511.95 | 82.89 |
