Table 2 Characteristics of repeat elements in the M. oryzae T2T 70-15 and MG8 assemblies.
From: An annotated near-complete sequence assembly of the Magnaporthe oryzae 70-15 reference genome
Elements | T2T 70-15 | MG8 | ||||
|---|---|---|---|---|---|---|
Number | Length (bp) | Percentage of genome | Number | Length (bp) | Percentage of genome | |
Total | 19,793 | 7,358,534 | 16.93% | 17,671 | 4,770,601 | 11.78% |
Retroelements | 2,114 | 5,226,394 | 12.02% | 1,337 | 2,953,443 | 7.29% |
LINEs | 244 | 732,291 | 1.68% | 223 | 655,623 | 1.62% |
LTR elements | 1,720 | 4,428,191 | 10.19% | 1,114 | 2,297,820 | 5.67% |
Ty1/Copia | 484 | 1,463,764 | 3.37% | 205 | 497,563 | 1.23% |
Gypsy/DIRS1 | 1,228 | 2,963,879 | 6.82% | 909 | 1,800,257 | 4.45% |
DNA transposons | 879 | 962,508 | 2.21% | 653 | 870,093 | 2.15% |
Small RNA | 105 | 32,990 | 0.08% | 81 | 8,404 | 0.02% |
Simple repeats | 12,881 | 478,739 | 1.11% | 12,204 | 447,226 | 1.11% |
Low complexity | 1,746 | 77,857 | 0.18% | 1,640 | 72,577 | 0.18% |
Unclassified | 2,061 | 577,664 | 1.33% | 1,756 | 418,858 | 1.03% |
