Table 4 The summary of repeat sequence statistics of P. humilis genome.
From: Chromosome-level assembly of Pseudopodoces humilis genome: A resource for avian evolutionary studies
Type | Number of elements (n) | Length of sequence (bp) | |
|---|---|---|---|
LTR | Gypsy | 18,182 | 2,739,338 |
ERV1 | 27,098 | 13,464,785 | |
Unknown | 40,542 | 12,270,369 | |
ERVL | 39,467 | 16,399,229 | |
ERVK | 25,474 | 11,876,272 | |
Other | 8,957 | 782,235 | |
LINE | CR1 | 146,649 | 40,241,662 |
Unknown | 6,477 | 1,881,996 | |
Other | 24,347 | 2,003,364 | |
SINE | Other | 9,205 | 993,680 |
DNA | Unknown | 21,007 | 4,670,236 |
Other | 68,543 | 5,608,002 | |
RC | Other | 4,060 | 495,629 |
MITE | Unknown | 3,488 | 1,483,686 |
Tandem Repeats | Tandem repeat | 144,353 | 16,895,908 |
SSR | 71,051 | 819,825 | |
Simple repeats | 14,099 | 3,689,369 | |
Unknown | 15,100 | 3,694,188 | |
Other | 6,020 | 4,435,342 | |
Low complexity | 2,272 | 473,424 | |
Total Repeats | 696,391 | 144,918,539 |
