Table 3 Comparison of assembly statistics of three Tanaka’s snailfish genome sequences.
From: An improved chromosomal-scale genome assembly of the Tanaka’s snailfish (Liparis tanakae)
This study | GCA_036178185.1 | GCA_006348945.1 | |
|---|---|---|---|
Total length (bp) | 574,442,414 | 554,262,514 | 498,979,456 |
Number of chromosome | 24 | 24 | — |
Number of scaffold | 126 | 926 | 27,878 |
Unplaced scaffold | 102 | 902 | — |
Chromosome anchoring rate | 97.87% | 95.47% | — |
Scaffold N50 (bp) | 24,637,528 | 23,043,945 | 375,216 |
Number of contig | 1,626 | 1,335 | 97,972 |
Contig N50 (bp) | 1,346,787 | 5,908,986 | 9,903 |
GC percent | 41.26% | 43.5% | 43.5% |
Assembly level | Chromosome | Chromosome | Scaffold |
Protein-coding gene | 20,933 (20,376 annotated) | — | 68,289 (68,269 annotated) |
Sequencing technology | Illumina, PacBio HiFi, Hi-C | Oxford Nanopore | Illumina |
