Table 5 Overview of available Python scripts for data preparation, along with the required input data tables for their functionality. The output is a merged data table with all relevant experimental information.

From: Two decades long-term field trial data on fertilization, tillage, and crop rotation focusing on soil microbes

Script name

Input data tables

bacteria.py

BACTERIA, BENEFICIAL, BIOPROJECT, HABITAT

fertilization.py

FERTILIZER, FERTILIZATION

fungi.py

BENEFICIAL, BIOPROJECT, FUNGI, HABITAT

gene_expression.py

GENE_EXPRESSION, GENE_EXPRESSION_CATEGORY

harvest.py

HARVEST, YIELD

plant_lab.py

BENEFICIAL, PLANT_LAB, PLANT_SAMPLING

plant_protection.py

PLANT_PROTECTION, PLANT_PROTECTION_PRODUCT, PLANT_PROTECTION_PRODUCT_TYPE

root.py

BENEFICIAL, ROOT

soil_lab.py

BENEFICIAL, SOIL_LAB, SOIL_SAMPLING

sowing.py

PLANT_VARIETY, SEED_STOCK, SOWING

tillage.py

TILLAGE, TILLAGE_MEASURE

common.py

CROP, EXPERIMENTAL_SETUP, FACTOR_1_LEVEL, FACTOR_2_LEVEL, PLOT TREATMENT, KINGDOM, PHYLUM, CLASS, ORDER, FAMILY, GENUS, SPECIES

Back to article page