Table 5 The statistics of gene structure prediction in P. lagowskii genome.
From: Telomere-to-telomere genome assembly of Phoxinus lagowskii
Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 62,450 | 7,986 | 1,327 | 5 | 267 | 1,681 |
Homolog | Carassius auratus | 27,402 | 18,172 | 1,799 | 9 | 197 | 1,778 |
Carassius carassius | 26,334 | 18,941 | 1,711 | 9 | 183 | 1,828 | |
Cyprinus carpio | 26,351 | 18,120 | 1,713 | 9 | 189 | 1,783 | |
Danio rerio | 22,844 | 19,479 | 1,828 | 9 | 194 | 1,846 | |
Megalobrama amblycephala | 26,980 | 19,187 | 1,776 | 9 | 194 | 1,895 | |
Rhinichthys klamathensis | 25,750 | 18,417 | 1,735 | 9 | 189 | 1,798 | |
RNA-seq | 20,428 | 20,989 | 6,242 | 25 | 251 | 619 | |
Final | 24,610 | 17,935 | 1,700 | 9 | 181 | 1,785 | |
