Fig. 1

General characteristics of Désirée genome assembly (a) Assembly graph of primary unitigs coloured by best match to DM chromosomes (also designated with numbers on the graph). (b) Merqury k-mer spectra for initial contigs and scaffolded chromosomes. The k = 21 was used. K-mers are categorized as read-only (grey), unique (red), and shared (blue, green, purple, orange). Peaks corresponding to higher multiplicities indicate the presence of highly repeated k-mers. (c) Dot plot comparing cv. Désirée chromosome-anchored contigs with DM v8.1 chromosomes. The colour designates contig identity. (d) Genomic synteny of cv. Désirée haplotype-resolved assembly.