Table 2 Summary of the repetitive sequences in C. fascicularis genome assembly.
From: High quality chromosome level genome assembly of Camellia fascicularis, an endangered plant in China
Type | Superfamily | Number | Length(bp) | Percent(%) |
|---|---|---|---|---|
Total | 7,943,983 | 3,853,635,256 | 68.21 | |
LTR | Total | 4,349,137 | 3,162,073,259 | 55.97 |
Copia | 382,909 | 290,919,441 | 5.15 | |
Gypsy | 1,788,875 | 1,764,552,843 | 31.23 | |
Retrovirus | 2,185 | 1,317,356 | 0.02 | |
unknown | 2,175,168 | 1,105,283,619 | 19.56 | |
LINE | 2,935 | 1,793,492 | 0.03 | |
DNA | Helitron | 173,620 | 62,621,046 | 1.11 |
TIR | Total | 1,016,575 | 430,502,903 | 7.62 |
EnSpm CACTA | 137,601 | 67,808,674 | 1.20 | |
MuDR Mutator | 719,431 | 299,565,201 | 5.30 | |
PIF Harbinger | 58,463 | 21,985,342 | 0.39 | |
Tc1 Mariner | 4,088 | 1,425,182 | 0.03 | |
hAT | 96,992 | 39,718,504 | 0.70 | |
Unknown | 210,546 | 101,910,042 | 1.80 | |
Simple repeat | 1,803,578 | 73,479,806 | 1.30 | |
Low complexity | 387,515 | 21,201,302 | 0.38 | |
Polinton | 77 | 53,406 | 0.00 | |
