Table 1 Baseline variables, summary statistics, and missing data in the dataset.
From: The community acquired pneumonia endotypes and phenotypes dataset
Identification and Baseline | |||
|---|---|---|---|
Characteristic | Variable name | Summary statistics | Missing data |
Patient age in years (median, IQR) | age | 60 (49–70) | 0 (0) |
Gender, male (%) | gender male | 482 (62.8) | 0 (0) |
Height (cm) (median, IQR) | height | 165 (158–170) | 361 (47.0) |
Weight (Kg) (median, IQR) | weight | 74 (64.2–84) | 278 (36.2) |
Body Mass Index (median, IQR) | BMI | 27.2 (24.4–30.2) | 364 (47.4) |
Patient is a health worker (%) | health_work | 4 (0.5) | 0 (0) |
Patient work in livestock or meat industry (%) | rural_work | 3 (0.4) | 0 (0) |
Patient lives in a geriatric home (%) | geriatric_home | 11 (1.4) | 0 (0) |
Patient in a state of prostration (%) | postramiento | 10 (1.3) | 0 (0) |
Patient lives in overcrowding (%) | living_space | 4 (0.5) | 0 (0) |
Previous influenza vaccination (%) | vac_influenza | 10 (1.3) | 63 (8.2) |
Previous pneumococcus vaccination (%) | vac_neumococo | 2 (0.3) | 63 (8.2) |
Respiratory infections in the last 12 months (%) | prev_infec | 27 (3.5) | 1 (0.13) |
Number of respiratory infections in the last 12 months (median, IQR) | num_prev_infec | 1 (1-1) | — |
Visits to the emergency department in the last 12 months (%) | urg_12_month | 88 (1.1) | — |
Number of emergency department visits in the last 12 months (median, IQR) | num_urg | 1 (1-1) | — |
Patient has received antibiotics in the last 12 months (%) | ab_12month | 79 (10.3) | 4 (0.5) |
Number of antibiotics received in the last 12 months (median, IQR) | prev_ab_num | 1 (1-1) | — |
Number of days using antibiotics (median, IQR) | prev_ab_days | 5 (3–7) | — |
COPD history (%) | copd | 82 (10.7) | — |
GOLD classification (median, IQR) | gold | 2 (2–4) | — |
History of smoking (%) | ant_taba | 141 (18.4) | 1 (0.13) |
Patient admitted to the ICU (%) | icu | 261 (33.9) | 234 (30.5) |
COVID diagnosis (%) | sosp_covid | 623 (81.1) | 2 (0.3) |
COVID vaccine (%) | vac_covid | 88 (11.5) | 7 (0.9) |
Patient has severity criteria according to IDSA/ATS (%) | criteria | 363 (47.3) | 1 (0.13) |
Meets with severity criteria according to IDSA/ATS (1 major or 3 minor) (%) | sev_criteria | 254 (33.1) | 3 (0.4) |
SOFA scale at admission (median, IQR) | admission_sofa | 2 (2–4) | 30 (3.9) |
CURB 65 at admission (median, IQR) | admission_curb | 1 (0–2) | 3 (0.4) |
PSI at admission (median, IQR) | admission_psi | 76 (57–100) | 13 (1.7) |
