Fig. 2 | Scientific Data

Fig. 2

From: A spatial transcriptomics dataset of the endometrium from repeated implantation failure patients

Fig. 2

Clustering of 10x Visium spots and constructing the spatial atlas. (a) Unsupervised clustering of 10131 spots into 12 clusters, and visualization on a non-linear dimension reduction method named 2D Uniform Manifold Approximation and Projection (UMAP). The 2D-UMAP plotting colored by sample (b) and group (c) information. (d) The 11 clusters were merged into 7 niches and shown using the UMAP plot. (e) The heatmap plot of the top 6 marker genes based on log2(Fold Change) values for each niche.

Back to article page