Table 1 Genomic Assembly and Annotation Sequencing Data Statistics of C. rotundus.
From: Chromosome-Level Genome Assembly and Annotation of purple nutsedge (Cyperus rotundus Cyperaceae)
Platform | Type | Sample | Molecule | Total clean data | Coverage | Usage | SRA accession number |
|---|---|---|---|---|---|---|---|
Illumina NovaSeq | PE | Leaf | DNA | 12 Gb | 40.95X | correction | SRR34082906 |
ONT | UL | Leaf | DNA | 12 Gb | 40.95X | de novo assembly | SRR34082905 |
PacBio HiFi | CCS | Leaf | DNA | 12 Gb | 40.95X | de novo assembly | SRR34082903 |
Illumina Hi-C | PE | Leaf | DNA | 23 Gb | 78.49X | chromosome-level assembly | SRR34082904 |
Illumina NovaSeq | PE | Root | RNA | 6.00 Gb | 20.47X | gene structure annotation | SRR34082902 |
Illumina NovaSeq | PE | Stem | RNA | 6.00 Gb | 20.47X | gene structure annotation | SRR34082901 |
Illumina NovaSeq | PE | Leaf | RNA | 6.00 Gb | 20.47X | gene structure annotation | SRR34082899 |
Illumina NovaSeq | PE | Flower | RNA | 6.00 Gb | 20.47X | gene structure annotation | SRR34082898 |
Illumina NovaSeq | PE | Tuber | RNA | 6.00 Gb | 20.47X | gene structure annotation | SRR34082900 |
