Table 2 Statistics of the C. rotundus genome assembly.
From: Chromosome-Level Genome Assembly and Annotation of purple nutsedge (Cyperus rotundus Cyperaceae)
Feature | Metric |
|---|---|
Hifiasm-derived contigs | |
Number of contigs | 237 |
Total length of contigs | 293,003,325 bp |
Longest contig | 8,964,331 bp |
contig N50 | 4,270,926 bp (contig number = 26) |
Contig N60 | 3,904,697 bp (contig number = 33) |
Contig N70 | 3,195,727 bp (contig number = 42) |
Contig N80 | 2,739,306 bp (contig number = 51) |
Contig N90 | 1,743,940 bp (contig number = 63) |
Hi-C scaffolded assembly | |
Number of scaffolds | 201 |
Total length of scaffolds | 293,021,325 bp |
Longest scaffold | 11,392,672 bp |
Scaffold N50 | 5,491,733 bp (scaffold number = 21) |
Scaffold N60 | 5,048,567 bp (scaffold number = 26) |
Scaffold N70 | 4,096,823 bp (scaffold number = 33) |
Scaffold N80 | 3,536,775 bp (scaffold number = 41) |
Scaffold N90 | 2,833,643 bp (scaffold number = 50) |
GC content | 36% |
