Table 5 Canonical marker genes used for cell type annotation.
From: A Multi-Omics Dataset of Prostate Cancer Response to Oncolytic Virus OH2 Treatment
Cell type | Marker genes |
|---|---|
Macrophages | Cd163, Cd86, Cd80, Nos2, Mrc1 |
Neutrophils | Fcgr3b, Csf3r, Cxcr2, G0s2, Cxcl8, S100a8, Ifitm2 |
T cells | Il7r, Cd8a, Trbc2, Ccl5, Cd4 |
Epithelial cells | Krt18, Epcam, Krt19, Prom1, Aldh1a1, Cd24a, Krt8, Krt14 |
Endothelial cells | Pecam1, Cd34, Pdpn, Fli1, Vwf, Erg, Icam1, Vcam1 |
Stromal cells | Acta2, Tagln, Myh11, Myl9, Des, Actg2, Cnn1, Myl6, Rgs5, C1s1, Dcn, C7, Ltbp4 |
Plasma cells | Ighg1, Mzb1, Sdc1, Cd79a |
B cells | Ms4a1, Cd22, Cd79a, Cxcr5, Cd19 |
NK cells | Nkg7, Kir, Klrd1, Ncam1, Fcgr3a, Klrc1, Xcl2, Gzmb, Klrb1, Klrf1, Fgfbp2 |
