Table 6 Transposable elements statistics for the T. erythraea genome.
Type | Repbase TEs | TE protiens | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | |
DNA | 110,018,513 | 13.86 | 8,882,742 | 1.12 | 125,893,982 | 15.86 | 18,921,4617 | 23.83 |
LINE | 39,576,077 | 4.98 | 31,284,014 | 3.94 | 34,893,050 | 4.39 | 54,998,357 | 6.93 |
SINE | 4,839,836 | 0.61 | 0 | 0 | 2,315,703 | 0.29 | 6,717,720 | 0.85 |
LTR | 42,831,560 | 5.39 | 27,763,515 | 3.5 | 50,745,746 | 6.39 | 71,394,596 | 8.99 |
Satellite | 3,002,556 | 0.38 | 0 | 0 | 1,464,292 | 0.18 | 4,346,240 | 0.55 |
Simple_repeat | 0 | 0 | 0 | 0 | 58,689 | 0.01 | 58,689 | 0.01 |
Other | 1,041 | 0 | 0 | 0 | 0 | 0 | 1,041 | 0 |
Unknown | 2,685,782 | 0.34 | 2,454 | 0 | 50,138,160 | 6.31 | 52,498,262 | 6.61 |
Total | 194,596,069 | 24.51 | 67,906,621 | 8.55 | 262,308,848 | 33.04 | 362,559,718 | 45.66 |
