Table 8 Statistics on transposable elements in the T. erythraea genome.
Gene set | Protein coding gene number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
De novo | Genscan | 28,740 | 18,167 | 1,611 | 8.52 | 189.16 | 2,203 |
AUGUSTUS | 24,438 | 11,953 | 1,429 | 8.27 | 172.83 | 1,448 | |
Homolog | Triplophysa yaopeizhii | 42,491 | 10,216 | 1,376 | 6.9 | 199.5 | 1,499 |
Triplophysa tibetana | 28,682 | 12,763 | 1,533 | 8.11 | 189.02 | 1,580 | |
Triplophysa dalaica | 53,849 | 18,833 | 1,886 | 10.73 | 175.85 | 1,743 | |
Triplophysa rosa | 52,283 | 19,422 | 1,973 | 10.96 | 180.04 | 1,752 | |
Ctenopharyngodon idella | 68,558 | 23,890 | 2,117 | 11.42 | 185.39 | 2,090 | |
Liftoff | Triplophysa rosa | 23,335 | 14,708 | 1,744 | 9.97 | 174.87 | 1,444 |
Triplophysa dalaica | 22,752 | 13,947 | 1,707 | 9.82 | 173.86 | 1,388 | |
Trans ORF | RNAseq | 14,802 | 18,387 | 1,856 | 11.76 | 304.64 | 1,376 |
BUSCO | 3,663 | 11,469 | 1,633 | 10.23 | 159.61 | 1,065 | |
MAKER | 25,593 | 15,577 | 1,521 | 9.63 | 280.24 | 1,493 | |
HiFAP | 25,179 | 15,309 | 1,669 | 9.72 | 252.31 | 1,475 |
