Table 5 Statistics of repeat sequence classification in the E. tetradactylum genome.
From: Near telomere-to-telomere genome assembly of the fourfinger threadfin (Eleutheronema tetradactylum)
Type | RepBase TEs | TE Proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | |
DNA | 34,601,389 | 5.91 | 3,713,038 | 0.63 | 21,899,652 | 3.74 | 50,892,902 | 8.69 |
LINE | 12,531,239 | 2.14 | 7,044,708 | 1.20 | 10,027,160 | 1.71 | 18,668,401 | 3.19 |
SINE | 1,271,331 | 0.22 | 0 | 0.00 | 606,641 | 0.10 | 1,704,600 | 0.29 |
LTR | 7,070,835 | 1.21 | 1,522,057 | 0.26 | 2,596,525 | 0.44 | 9,924,602 | 1.70 |
Satellite | 3,782,983 | 0.65 | 0 | 0.00 | 97,452 | 0.02 | 3,872,398 | 0.66 |
Simple_repeat | 0 | 0.00 | 0 | 0.00 | 425,178 | 0.07 | 425,178 | 0.07 |
Other | 5,685 | 0.00 | 150 | 0.00 | 0 | 0.00 | 5,835 | 0.00 |
Unknown | 313,473 | 0.05 | 11,007 | 0.00 | 20,209,818 | 3.45 | 20,487,336 | 3.50 |
Total | 52,829,496 | 9.02 | 12,280,039 | 2.10 | 54,903,217 | 9.38 | 97,672,199 | 16.69 |
