Fig. 2
From: A haplotype-phased male genome sequence of the stinging nettle, Urtica dioica ssp. dioica
Circos plot for the male nettle genome assembly. From the inside out, tracks show (a) structural variants identified by SyRI: grey = syntenic regions, purple = inversions, green = translocations, yellow = duplications, mint = inverted translocations, pink = inverted duplications; (b) gene density in 500 kbp windows; (c) transposable elements (TE) density in 500 kbp windows; (d) Shannon diversity of repeats mean score per 250 kbp window; (e) putative centromeric locations (black bands) based on RepeatOBserver Shannon diversity score. Haplotype 1 is shown in green on the right, haplotype 2 in pink on the left. The maximum y-axis value for the TE counts was set to 4000 to show variation across the genome, resulting in a total of 25 windows that exceed the plot’s range. TE counts for these windows with >4000 TEs are reported in Supplementary Table 4.
