Fig. 1
From: A telomere-to-telomere reference genome assembly of the Hypomesus nipponensis
A T2T genome assembly of H. nipponensis. (a) An image of the sequenced fish. (b) K-mer frequency distribution estimated. The observed K-mer (raw K-mer) frequencies (in grey), fitted K-mer frequencies (in blue) with skew normal distribution model, and overall fitting (in red) that concatenated observed and fitted K-mer frequencies. Genome size estimate for 19-mer: 525,729,808 bp. (c) Snail plot showing the features of the assembled H. nipponensis genome. The contiguity and completeness of the H. nipponensis genome assembly after contamination screening is plotted as a circle that represents the full length of the assembly (~526.31 Mb). The N50 (20.23 Mb) is highlighted in dark orange and the N90 (13.86 Mb) in light orange. The longest contig was 27.41 Mb (highlighted in red). The assembly has a uniform GC content of 45.85% and the BUSCO scores are shown in the top right corner in green. (d) Hi-C assembly of chromosome interactive heat map. The abscissa and ordinate represent the order of each bin on the corresponding chromosome group. The colour block illuminates the intensity of interaction from white (low) to red (high).
