Table 2 Assembly statistics using two different assembly software.
From: A telomere-to-telomere reference genome assembly of the Hypomesus nipponensis
Method | HiFiasm | NextDenovo | ||
|---|---|---|---|---|
Read type | PacBio | PacBio + error-corrected ONT | ONT | ONT |
N50 (bp) | 666,015 | 4,460,278 | 18,759,114 | 15,907,864 |
Largest contig | 10,531,176 | 20,739,669 | 27,407,527 | 24,001,982 |
Total size (bp) | 505,311,569 | 554,942,883 | 774,050,513 | 516,291,601 |
Total number | 2,012 | 566 | 76 | 72 |
GC rate (%) | 45.6 | 45.7 | 45.9 | 45.8 |
