Table 1 Locations of populations of Indigofera bungeana complex sampled, sample sizes (n), frequencies of chloroplast and Pgk1 haplotypes per population, the geographic region (Figs 1 and 2) and lineage (Figs 3a and 4a) for each population.

From: The demographic response of a deciduous shrub (the Indigofera bungeana complex, Fabaceae) to the Pleistocene climate changes in East Asia

Species

Population

Location

Longitude

Latitude

E

cpDNA

Pgk1

Code (Region)

(E)

(N)

(m)

n

Chlorotype nos.

Lineage

n

Haplotype nos.

Lineage

I. amblyantha

JY1 (B)

Jiyuan, HEN

112°16′04″

35°11′23″

1650

4

C37(3), C38(1)

C

6

H2(2), H21(2), H22(1), H23(1)

III

JZ (C)

Jinzhai, AH

115°51′22″

31°14′10″

427

9

C43(5), C44(2), C45(2)

C

16

H6(9), H21(4), H22(1), H26(1), H27(1)

II

MX2 (A)

Maoxian, SC

103°51′36″

31°41′24″

1800

12

C61(12)

C

22

H22(4), H43(17), H44(1)

III

RC (B)

Ruicheng, SX

110°32′28″

34°47′33″

1350

10

C40(1), C70(4), C71(1), C72(1), C73(3)

C

20

H5(1), H6(6), H21(9), H48(1), H49(1), H50(1), H51(1)

III

SNJ (C)

Shennongjia, HUB

110°22′58″

31°28′29″

1367

10

C67(1), C77(9)

C

20

H6(18), H21(2)

III

SQ (C)

Shiquan, SHX

108°15′00″

33°03′09″

530

15

C5(1), C71(1), C78(3), C79(1), C80(4), C81(3), C82(1), C83(1)

C

16

H2(1), H16(2), H17(2), H21(2), H43(6), H54(1), H55(1), H56(1)

I, III

TMS2 (C)

Tianmushan, ZJ

119°27′22″

30°20′16″

600

5

C23(1), C91(4)

C

10

H2(1), H21(2), H54(7)

III

WN2 (C)

Wuning, JX

114°55′12″

29°18′36″

500

10

C24(3), C45(4), C52(1), C100(1), C103(1)

C

18

H16(5), H17(10), H37(1), H38(1), H61(1)

I

WN3 (C)

Wuning, JX

114°55′12″

29°22′12″

850

13

C24(3), C43(1), C104(1), C105(8)

C

26

H6(8), H21(13), H54(1), H62(4)

III

XIX1 (C)

Xixia, HEN

111°47′44″

33°37′38″

1500

10

C116(2), C117(2), C118(5), C119(1), C120(1)

C

20

H6(11), H21(5), H65(2), H66(2)

III

XY (C)

Xinyang, HEN

114°04′24″

31°49′07″

438

9

C124(4), C125(1), C126(1), C127(1), C128(2)

C

16

H2(1), H6(6), H21(7), H68(2)

III

I. bungeana

AL (B)

Anlong, GZ

105°35′24″

25°04′48″

1415

11

C1(8), C2(3)

C

22

H1(20), H2(2)

III

CP (B)

Changping, BJ

116°06′53″

40°13′57″

150

9

C3(1), C4(2), C5(5), C6(1)

C

20

H2(8), H3(2), H4(6), H5(2), H6(1), H7(1)

III

DFA (C)

Dafang, GZ

105°43′48″

26°59′24″

1377

9

C7(4), C8(3), C9(2)

B, C

20

H1(20)

III

DFE (C)

Danfeng, SHX

110°16′12″

33°42′36″

570

10

C10(2), C11(1), C12(3), C13(1), C14(1), C15(1), C16(1)

C

20

H8(1), H9(2), H10(1), H11(13), H12(1), H13(1), H14(1)

I, III

DQ (A)

Deqin, YN

98°54′36″

28°01′48″

1930

7

C17(6), C18(1)

C

18

H1(16), H2(2)

III

HS (C)

Huangshan, AH

118°14′23″

31°14′31″

500

9

C20(1), C21(1), C22(1), C23(1), C24(1), C25(2), C26(1), C27(1)

C

20

H15(7), H16(1), H17(3), H18(7), H19(2)

I, III

HZ (B)

Huozhou, SX

111°55′28″

36°36′14″

1150

10

C28(1), C29(8), C30(1)

C

16

H2(11), H20(5)

III

JN (B)

Jinan, SD

117°03′36″

36°38′24″

250

9

C31(6), C32(3)

C

20

H2(17), H3(3)

III

JR (C)

Jurong, JS

119°05′15″

32°08′33″

150

10

C23(5), C27(1), C33(1), C34(1), C35(1), C36(1)

C

14

H15(4), H16(2), H18(6), H19(2)

I, III

JY2 (B)

Jiyuan, HEN

112°16′04″

35°11′23″

1250

10

C37(3), C38(1), C39(1), C40(2), C41(3)

C

16

H2(10), H24(2), H25(4)

III

JZG (A)

Jiuzhaigou, SC

103°51′01″

33°17′24″

2200

12

C36(6), C42(6)

C

16

H2(2), H3(1), H6(12), H22(1)

III

KLQQ (B)

Kelaqinqi, IM

118°41′02″

41°55′17″

600

10

C5(10)

C

20

H2(3), H3(1), H5(4), H7(3), H22(4), H28(1), H29(1), H30(3)

III

LC (C)

Liancheng, FJ

116°42′45″

25°35′06″

360

10

C36(1), C46(9)

C

20

H15(13), H17(1), H18(6)

I

LD1 (A)

Luding, SC

102°10′12″

29°37′12″

1150

12

C47(8), C48(2), C49(2)

B, C

20

H31(2), H32(18)

III

LD3 (A)

Luding, SC

102°04′48″

29°37′48″

1800

9

C50(9)

C

16

H32(16)

III

LS (C)

Lushang, JX

116°01′12″

29°30′36″

650

10

C24(2), C43(2), C51(3), C52(1), C53(1), C54(1)

C

18

H16(2), H17(8), H35(1), H36(1), H37(4), H38(1), H39(1)

I

LY (C)

Leye, GX

106°25′12″

24°40′48″

1000

10

C1(10)

C

22

H1(20), H2(2)

III

MEX (B)

Meixian, SHX

107°53′44″

34°05′14″

830

9

C55(5), C56(2), C57(1), C58(1)

C

20

H3(5), H6(10), H21(1), H29(1), H40(1), H41(2)

III

MX1 (A)

Maoxian, SC

103°43′48″

31°34′48″

1700

8

C59(7), C60(1)

C

20

H2(3), H6(14), H42(3)

III

MY (B)

Miyun, BJ

116°47′11″

40°34′22″

440

10

C4(1), C5(7), C64(1), C65(1)

C

20

H2(13), H3(1), H4(1), H5(2), H7(2), H30(1)

III

NC (C)

Nanchuan, CQ

107°09′36″

29°01′12″

1300

10

C8(1), C9(5), C66(1), C67(3)

B, C

12

H16(8), H38(1), H47(3)

I

NQ (B)

Neiqiu, HEB

114°16′48″

37°18′36″

500

10

C5(6), C68(3), C69(1)

C

20

H2(15), H4(1), H22(4)

III

SME (C)

Shimen, HUN

110°51′36″

29°58′12″

335

5

C36(2), C74(2), C75(1)

C

6

H16(1), H38(1), H47(2), H52(2)

I, III

SMI (A)

Shimian, SC

102°18′36″

29°15′36″

850

10

C47(8), C49(1), C76(1)

B, C

20

H32(17), H33(2), H53(1)

III

SX (B)

Shexian, HEB

113°30′13″

36°43′45″

608

10

C69(2), C84(1), C85(2), C86(1), C87(1), C88(2), C89(1)

C

20

H2(9), H3(2), H22(3), H57(4), H58(2)

III

TMS1 (C)

Tianmushan, ZJ

119°27′22″

30°20′16″

450

5

C23(2), C90(1), C91(1), C92(1)

C

10

H15(6), H18(4)

I

TT (C)

Tiantai, ZJ

121°02′32″

29°14′28″

753

10

C23(3), C26(1), C75(1), C93(1), C94(1), C95(1), C96(1), C97(1)

C

14

H1(1), H2(1), H15(5), H18(5), H59(2)

I, III

WM (C)

Wangmo, GZ

106°06′36″

25°19′48″

1030

8

C1(7), C98(1)

C

22

H1(22)

III

WN1 (C)

Wuning, JX

115°00′36″

29°10′12″

150

10

C24(2), C45(1), C99(1), C100(2), C101(1), C102(2)

C

20

H16(2), H17(10), H37(2), H38(1), H39(1), H60(4)

I

WT (B)

Wutai, HEB

113°32′10″

38°43′09″

1100

9

C32(7), C69(2)

C

14

H2(14)

III

WX2 (A)

Weixi, YN

99°16′12″

27°12′36″

2320

9

C27(1), C74(1), C107(1), C111(2), C112(1), C113(1), C114(1), C115(1)

C

12

H16(3), H17(4), H38(1), H47(2), H60(1), H64(1)

I

XIX2 (C)

Xixia, HEN

111°29′43″

33°18′42″

650

10

C121(10)

C

16

H1(5), H16(2), H67(9)

I, III

XX (B)

Xingxian, SX

111°16′37″

38°13′08″

1633

9

C122(7), C123(2)

C

18

H2(17), H22(1)

III

YJ (C)

Yinjiang, GZ

108°33′36″

27°59′24″

765

9

C8(6), C9(3)

B

10

H1(8), H17(2)

I, III

ZD (B)

Zhidan, SHX

108°16′35″

36°33′18″

1220

9

C129(3), C130(4), C131(2)

C

20

H3(1), H5(5), H6(7), H20(5), H22(1), H29(1)

III

ZL (B)

Zhuolu, HEB

115°17′26″

39°53′45″

616

10

C5(4), C6(1), C132(4), C133(1)

C

14

H2(2), H5(8), H6(1), H22(3)

III

I. ramulosissima

HL (C)

Hualian, TW

121°33′36″

24°10′48″

650

1

C19(1)

C

2

H15(2)

I

I. silvestrii

LD2 (A)

Luding, SC

102°17′24″

29°51′01″

2280

9

C47(9)

B

16

H32(9), H33(5), H34(2)

III

MX3 (A)

Maoxian, SC

103°43′48″

31°34′48″

1435

9

C62(7), C63(2)

A

20

H45(16), H46(4)

III

WX1 (A)

Weixi, YN

99°16′12″

27°12′36″

2320

9

C36(1), C67(3), C106(1), C107(1), C108(1), C109(1), C110(1)

C

16

H1(1), H16(8), H17(3), H38(2), H60(1), H63(1)

I, III

  1. Frequencies of chlorotypes and Pgk1 haplotypes are shown in parentheses. Private haplotype particular to each population are underlined.
  2. Abbreviations: HEN, Henan; SC, Sichuan; HUB, Hubei; SX, Shanxi; SHX, Shannxi; ZJ, Zhejiang; JX, Jiangxi; GZ, Guizhou; BJ, Beijing; YN, Yunnan; AH, Anhui; SD, Shandong; JS, Jiangsu; IM, Inner Mongolia; FJ, Fujian; GX, Guangxi; CQ, Chongqing; HEB, Hebei; HUN, Hunan; Taiwan, TW.
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