Table 1 Chromosome distribution of developed ILP markers in G. raimondii genome.

From: Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton

Chr./Scaffold*

No. of genes

No. of genes developed markers

No. of primer pairs

Chromosome length (Mb)

Physical density (markers/Mb)%

Chr01

501

354

680

55.86823

8.967529

Chr02

501

357

719

62.76943

7.981592

Chr03

354

255

504

45.76565

7.735059

Chr04

575

392

806

62.17826

9.247605

Chr05

515

360

756

64.14041

8.029259

Chr06

557

397

799

51.07452

10.90563

Chr07

708

507

1056

60.98247

11.60989

Chr08

606

449

917

57.12882

10.60761

Chr09

935

693

1407

70.71302

13.22246

Chr10

459

329

678

62.17517

7.382368

Chr11

514

364

753

62.68101

8.200251

Chr12

331

224

462

35.42995

9.342379

Chr13

493

340

643

58.32116

8.453192

Scaffold

21

/

/

/

/

Total

7070

5021

10180

749.2281

9.40835

  1. *The nomenclature of Chr./Scaffold in G. raimondii is from Paterson et al.18.