Table 2 KEGG classification of 7,070 orthologs and their percentage in the whole genome.

From: Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton

Classification*

Numbers in 7,070 genes

Numbers in G. raimondii genome

Percentage (%)

1. Metabolism

2825

9225

30.62

 1.1 Carbohydrate metabolism

770

2310

33.33

 1.2 Energy metabolism

224

647

34.62

 1.3 Lipid metabolism

348

1193

29.17

 1.4 Nucleotide metabolism

187

673

27.79

 1.5 Amino acid metabolism

460

1356

33.92

 1.6 Metabolism of other amino acids

110

355

30.99

 1.7 Glycan biosynthesis and metabolism

103

348

29.60

 1.8 Metabolism of cofactors and vitamins

167

608

27.47

 1.9 Metabolism of terpenoids and polyketides

88

296

29.73

 1.10 Biosynthesis of other secondary metabolites

203

747

27.18

 1.11 Xenobiotics biodegradation and metabolism

165

689

23.95

 1.12 Chemical structure transformation maps

/

3

0.00

2. Genetic Information Processing

26

85

30.59

 2.2 Translation

26

85

30.59

3. Environmental Information Processing

53

147

36.05

 3.2 Signal transduction

53

147

36.05

4. Organismal Systems

44

212

20.75

 4.1 Immune system

44

212

20.75

  1. *KEGG annotation and metabolism maps were performed with BLAST2GO.