Table 3 ILP markers polymorphism between diploid A- and D-genome (A/D), or between tetraploid AtDt-genome (GhAtDt/GbAtDt) in nine tested gene family*.

From: Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton

Gene family

No. of tested marker

A/D

GhAtDt/GbAtDt

No. of polymorphic marker

Polymorphic rate (%)

No. of polymorphic marker

Polymorphic rate (%)

Aquaporin

14

10

71.43

9

64.29

Heat shock proteins

24

16

66.67

4

16.67

NAC transcription factors

25

21

84.00

6

24.00

WRKY transcription factors

27

24

88.89

15

55.56

Mitogen-activated protein kinase

37

26

70.27

12

32.43

Cytochrome P450

59

37

62.71

14

23.73

Leucine-rich repeat

74

56

75.68

29

39.19

WD40 repeat-containing proteins

111

84

75.68

40

36.04

Zinc finger

164

115

70.12

66

40.24

Total

535

389

72.71

195

36.45

  1. *A/D means two diploid cotton species, G. herbaceum var. africanum (A-genome) and G. raimondii (D-genome).
  2. GhAtDt/GbAtDt means two allotetraploid cultivated species, G. barbadense cv. Hai7124 and G. hirsutum acc. TM-1.