Table 1 General features of three isolates and their complete genome sequences.
Strain name | Organism | Country | Isolation source | Year | In silico serotyping | Replicon | Chromosomal sequence type or plasmid Inc type | Drug resistance genes | Length (bp) | Average coveragea | Copy numberb |
|---|---|---|---|---|---|---|---|---|---|---|---|
MRY16-002 (=20Ec-P-124) | E. coli | Japan | swine | 2008 | O24:H4 | chromosome | ST117 | N.D. | 4,920,828 | 135.41 | 1.0 |
pMRY16-002_1 | IncFIB and X1 | N.D. | 168,972 | 185.91 | 1.4 | ||||||
pMRY16-002_2 | N.D. (phage-like plasmid) | N.D. | 108,986 | 298.92 | 2.2 | ||||||
pMRY16-002_3 | IncP | aph(3′)-Ia, tet(A) | 108,957 | 176.26 | 1.3 | ||||||
pMRY16-002_4 | IncI2 | mcr-1 | 61,805 | 219.75 | 1.6 | ||||||
pMRY16-002_5 | Col156 | N.D. | 6,078 | N.A. | N.A. | ||||||
pMRY16-002_6 | N.D. | N.D. | 4,073 | N.A. | N.A. | ||||||
MRY15-117 | E. coli | Japan | cattle | 2012 | O11:H25 | chromosome | ST457 | sul2, strA, strB, tet(A), floR | 5,117,319 | 164.98 | 1.0 |
pMRY15-117_1 | IncFIB and FII | dfrA14, mph(A), erm(B), aac(3)-IIa, ∆bla TEM-1, bla CTX-M-27 | 116,529 | 269.38 | 1.6 | ||||||
pMRY15-117_2 | IncI2 | mcr-1 | 61,223 | 221.03 | 1.3 | ||||||
MRY15-131 | E. coli | Japan | cattle | 2013 | O1:H25 | chromosome | ST457 | sul2, strA, strB, tet(A) | 5,042,704 | 135.07 | 1.0 |
pMRY15-131_1 | IncFIB and FII | dfrA14, mph(A), erm(B), aac(3)-IIa, ∆bla TEM-1, bla CTX-M-27 | 116,529 | 218.3 | 1.6 | ||||||
pMRY15-131_2 | IncI2 | mcr-1 | 60,722 | 187.18 | 1.4 |
