Table 3 The average performance of each method on 134 ChIP-seq datasets.
From: WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data
Average AUC (%) | DREME | HOMER | XXmotif | motifRG | DECOD | WSMD |
|---|---|---|---|---|---|---|
Training datasets | 77.43 | 79.11 | 77.13 | 62.91 | 77.16 | 82.80 |
Test datasets | 77.01 | 78.74 | 76.85 | 62.83 | 76.98 | 81.86 |
Average Fisher’s score (log10) | DREME | HOMER | XXmotif | motifRG | DECOD | WSMD |
Training datasets | −37.42 | −54.75 | −57.81 | −26.61 | −59.77 | −96.83 |
Test datasets | −18.50 | −27.42 | −27.77 | −13.06 | −29.37 | −44.91 |
Average MHG score (log10) | DREME | HOMER | XXmotif | motifRG | DECOD | WSMD |
Training datasets | −185.95 | −187.62 | −173.93 | −112.67 | −167.23 | −219.87 |
Test datasets | −91.34 | −92.82 | −86.58 | −55.83 | −84.16 | −108.08 |
