Figure 7 | Scientific Reports

Figure 7

From: Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

Figure 7

Dynamic residue interaction network (DRIN) in oxidized and reduced states of hPDI. The size of each vertex was assigned according to the maximum absolute weights of the edges arriving it. Sigmoid-like transformations from weights to the color or thickness of edges were used to show the interactions with unchanged weights between ox and red states as very thin grey edges, and the interactions with significantly higher persistence in one state as thick blue (red) or red (ox) edges. Nodes are colored by domains as yellow, red, green, blue and gray denote as domains a, b, b’, a’ and inter domain linkers, respectively.

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