Table 3 Classification of RGAs identified in the six genotypes.
From: Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation
Identified Domains | Acronym | 2 C | A41 | VS | VT | C3 | SP |
|---|---|---|---|---|---|---|---|
LRR:NB-ARC | NL | 9 | 7 | 7 | 6 | 8 | 7 |
LRR:NB-ARC:CC | CNL | 4 | 4 | 4 | 6 | 4 | 5 |
LRR:NB-ARC:TIR | TNL | — | — | 1 | — | — | — |
LRR:NB-ARC:TM | other-TMNL | 1 | — | 1 | — | 1 | — |
LRR:NB-ARC:TM:CC | other-LNTMC | — | — | — | — | — | 1 |
NB-ARC | N | 9 | 8 | 9 | 8 | 9 | 11 |
NB-ARC:CC | CN | 7 | 7 | 8 | 8 | 8 | 10 |
NB-ARC:TIR | TN | 1 | 1 | 1 | 1 | 1 | 1 |
NB-ARC:TM | other-NT | 4 | 3 | 3 | 2 | 4 | 2 |
NB-ARC:TM:CC | other-NTMC | 3 | 2 | 1 | 2 | 3 | 1 |
LRR:Pkinase:TM | RLK | 173 | 175 | 175 | 170 | 180 | 173 |
LRR:TM | RLP | 86 | 72 | 65 | 71 | 77 | 65 |
Pkinase | other-K | 59 | 58 | 57 | 54 | 58 | 60 |
Pkinase:CC | other-KC | 9 | 9 | 8 | 9 | 9 | 8 |
Pkinase:TM | other-KTM | 157 | 146 | 149 | 156 | 155 | 148 |
Pkinase:TM:CC | other-KTMC | 4 | 4 | 3 | 3 | 4 | 5 |
LRR:Pkinase | KL | 1 | 3 | 2 | 1 | 1 | |
LRR:Pkinase:TM:CC | other-LRTMC | 5 | 5 | 4 | 6 | 6 | 6 |
LRR:TM:CC | other-CLTM | 1 | — | — | — | — | — |
TIR | T | 2 | 2 | — | 2 | 2 | 2 |
LRR | L | 22 | 27 | 24 | 17 | 19 | 23 |
ABC_tran | other-A | 1 | 1 | 1 | 2 | 1 | 2 |
ABC_tran:Pkinase:TM | other-AKTM | — | 1 | — | — | — | — |
ABC_tran:TM | other-ATM | 49 | 46 | 46 | 47 | 50 | 46 |
ABC_tran:TM:CC | other-ACTM | 4 | 4 | 5 | 4 | 3 | 4 |
Total | — | 611 | 585 | 574 | 574 | 603 | 581 |
% of Blastp genes identified with HMM domains | — | 0,9 | 0,9 | 0,9 | 0,9 | 0,9 | 0,9 |
Blastp genes identified | — | 685 | 654 | 643 | 640 | 675 | 647 |
