Table 4 Statistics (SNP, Indel and SNP/indel) of the analyzed genotypes.
From: Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation
Genotypes | 2 C | A41 | VS | VT | C3 | SP |
|---|---|---|---|---|---|---|
SNP | 781,530 | 5,900,934 | 13,440,135 | 11,860,358 | 11,937,400 | 13,241,315 |
SNP rate | 0.11% | 0.81% | 1.85% | 1.64% | 1.65% | 1.83% |
SNP/1000 bp | 1.07 | 8.13 | 18.53 | 16.35 | 16.46 | 18.26 |
1 SNP every (bp) | 927.6 | 122.8 | 53.9 | 61.1 | 60.7 | 54.7 |
Indel | 34,232 | 443,603 | 1,055,545 | 987,949 | 910,23 | 1,150,341 |
Indel rate | 0.0047% | 0.06% | 0.15% | 0.14% | 0.13% | 0.16% |
Indel/1000 bp | 0.05 | 0.61 | 1.46 | 1.36 | 1.26 | 1.59 |
1 Indel every (bp) | 21,179 | 1,634 | 686.8 | 733.8 | 796.5 | 630.2 |
SNP/indel | 815,853 | 6,344,545 | 14,495,680 | 12,848,307 | 12,847,630 | 14,391,656 |
SNP/indel rate | 0.11% | 0.87% | 1.99% | 1.77% | 1.77% | 1.98% |
SNP/indel/1000 bp | 1.12 | 8.75 | 19.99 | 17.72 | 17.72 | 19.85 |
1 SNP/indel every (bp) | 892.85 | 114.27 | 50.01 | 56.42 | 56.43 | 50.37 |
