Figure 4
From: Genome-wide analysis of long noncoding RNA profiling in PRRSV-infected PAM cells by RNA sequencing
Conservation analysis of lncRNAs and mRNAs. PhyloFit was used to compute phylogenetic models for conserved and non-conserved regions among species. The model and HMM transition parameters were then input into phyloP to compute a set of conservation scores for lncRNA and coding genes. (a) Conservation scores of different regions of porcine lncRNAs and mRNAs identified in RNA-seq. (b) Conservation score of human, mouse, and porcine lncRNAs and mRNAs.
