Table 1 Primers used in this study.

From: Avian reovirus p17 and σA act cooperatively to downregulate Akt by suppressing mTORC2 and CDK2/cyclin A2 and upregulating proteasome PSMB6

Gene

Accession number

Sequence (5′-3′)

Location

Expected size (bp)

Primers for cloning

p17a (Flag-tagged)

AF330703

F: CGGAATTCATGCAATGGCTCCGCCATACGA (EcoR I)

293–314

441

R: GCTCTAGATCATAGATCGGCGTCAAATCGC (Xba I)

733–712

p17b (His-tagged)

AAF45152

F: CCCAAGCTTATGCAATGGCTCCGCCATACGA (Hind III)

293–314

441

R: CCGCTCGAGTCATAGATCGGCGTCAAATCGC (Xho I)

733–712

p17 (1–118)a (Flag-tagged)

AF330703

F: CGGAATTCACAATGCAATGGCTCCGCCATACG (EcoR I)

293–313

354

R: AAACTCGAGTCAGGATTGAGACCCGCCATCCCAATG (Xho I)

646–623

CDK2c

XM_001113345.3

F: GCGGAATTCATGGAGAACTTCCAAAAGGTGGAAAAG (EcoRI)

235–262

897

R: AAACTCGAGTCAAAGTCCAAGATGGGGTACTGGC (XhoI)

1131–1110

Cyclin A2c

NP_001777

F: AAAGAATTCATGTTGGGCAACTCCGCGCCGGGG (EcoRI)

306–330

1299

R: GGGCTCGAGTTACAGATTTAGTGTCTCTGGTGGG (XhoI)

1604–1580

σAd

AF104311

F: TCTAGAACGATGGCGCGTGCCATATAC (XbaI)

16–33

1251

R: GTCGACCTAGGCGGTAAAAGTG GC (SalI)

1266–1249

 

PSMB6a

NM_001195714

F: AAGCTTACCATGGCGGCCACCCTACTAGCT (Hind III)

19–39

697

R: GGATCCTCAGGGGGGCGGTAAAGTGGCAAT (Bam HI)

738–715

CDK2d

XM_001113345.3

F: CGGAATTCACCATGGAGAACTTCCAAAAG (EcoRI)

236–253

897

R: GTCGACTCAAAGTCCAAGATGGGGTAC (SalI)

1132–1110

 

Primers for semi-quantitative RT-PCR

RPL 7

NM_001193556

F: TCAATGGAGTAAGCCCAAAG

313–332

246

R: CAAGAGACCGAGCAATCAAG

558–540

RPL 26

NM_001193566

F: CATTTCAATGCACCTTCCCAC

80–100

274

R: GCCTAGTGATAACCACCTTGC

331–353

MDM2

NM_001266402

F: GTGAATCTACAGGGACGCCATC

945–963

334

R: GGCCCAACATCTGTTGCAA

1279–1261

GAPDH

NM_002046

F: CACCACCATGGAGAAGGCTGGGGCTCA

480–506

454

R:GGCAGGTTTCTCCAGACGGCAGGTCAG

933–907

  1. aPCR products cloned in pcDNA3.1-Flag vector; bPCR products cloned in pET32a vector; cPCR products cloned in pGEX4T-1vector; dPCR products cloned in cloned in pCI-neo vector.