Table 2 Therapy failure-related adaptive mutations.
Mutationa | bnAbs | Population frequency | Regiona | TF group | VS group | |||
|---|---|---|---|---|---|---|---|---|
TF group | VS group | Ka/Ks | Sequence frequency | Ka/Ks | Sequence frequency | |||
K59R | — | 0.15 | 0.04 | C1 | 24 | 0.08 | 0.75 | 0.04 |
V84I | — | 0.2 | 0.04 | C1 | 30.95 | 0.06 | 0.25 | 0 |
I108V | — | 0.2 | 0.08 | C1 | 17.27 | 0.08 | 2.18 | 0.01 |
L134Y | PGT122 | 0.2 | 0.04 | V1-V2 | 7.2 | 0.13 | 0.82 | 0.03 |
K135L | 0.15 | 0.04 | V1-V2 | 7.67 | 0.08 | 0.35 | 0.03 | |
D137L | 0.15 | 0 | V1-V2 | 27 | 0.09 | — | — | |
T138R | 0.15 | 0 | V1-V2 | 21 | 0.07 | — | — | |
G145N | 0.5 | 0.08 | V1-V2 | 58 | 0.2 | 0.67 | 0.01 | |
M149S | 0.15 | 0 | V1-V2 | 4 | 0.01 | — | — | |
E150S | 0.15 | 0 | V1-V2 | 40 | 0.14 | — | — | |
R166Q | PG9, PG16 | 0.15 | 0 | V1-V2 | 25 | 0.09 | — | — |
Q170K | 0.15 | 0 | V1-V2 | 72.26 | 0.09 | — | — | |
L179I | 830A | 0.15 | 0 | V1-V2 | 138.6 | 0.1 | — | — |
P183K | 0.15 | 0 | V1-V2 | 30 | 0.1 | — | — | |
T194M | 0.2 | 0.04 | V1-V2 | 7 | 0.02 | 2 | 0.01 | |
T232K | 35O22 | 0.3 | 0.16 | C2 | 3.87 | 0.18 | 0.97 | 0.08 |
T232R | 0.15 | 0 | C2 | 2.43 | 0.11 | — | — | |
T240K | 0.15 | 0.04 | C2 | 71.69 | 0.1 | 2.38 | 0 | |
V242I | 0.15 | 0.04 | C2 | 1.99 | 0.08 | 0.04 | 0 | |
E267K | 0.15 | 0.04 | C2 | 1.7 | 0.06 | 0.5 | 0 | |
E269G | 0.25 | 0.12 | C2 | 2.27 | 0.09 | 0.69 | 0.05 | |
V292I | B12 | 0.25 | 0.08 | C2 | 2.46 | 0.04 | 1.04 | 0.01 |
E293T | 0.15 | 0.04 | C2 | 23 | 0.08 | 0.5 | 0 | |
E293I | 0.2 | 0.04 | C2 | 7 | 0.02 | 0.5 | 0 | |
N295D | 0.3 | 0.04 | C2 | 3.5 | 0.07 | 0.33 | 0 | |
I371V | VRC01 | 0.55 | 0.04 | C3 | 27.65 | 0.21 | 1.36 | 0 |
N392S | PGT135 | 0.2 | 0.04 | V4 | 1.18 | 0.14 | 0.03 | 0 |
F396H | 0.15 | 0 | V4 | 14 | 0.05 | — | — | |
N397T | 0.2 | 0 | V4 | 63.93 | 0.08 | — | — | |
T402N | 0.2 | 0.04 | V4 | 47.79 | 0.04 | 14.27 | 0.01 | |
S405Q | 0.15 | 0.04 | V4 | 1.18 | 0.05 | 0.1 | 0.01 | |
N407G | 0.5 | 0.28 | V4 | 1.57 | 0.25 | 0.98 | 0.14 | |
R419K | B12 | 0.3 | 0.08 | C4 | 1.14 | 0.13 | 0.55 | 0.03 |
A607N | — | 0.15 | 0 | gp41 | 46 | 0.16 | — | — |
E662K | 2F5 | 0.35 | 0 | gp41 | 61 | 0.21 | — | — |
N677K | 4E10 | 0.8 | 0.44 | gp41 | 3.33 | 0.61 | 0.94 | 0.27 |