Table 2 Characteristics of previously developed microsatellite loci for Pocillopora: locus name, forward and reverse primer sequences, and GenBank accession number.
Locus | Forward primer sequence (5ʹ-3ʹ) | Reverse primer sequence (5ʹ-3ʹ) | Accession No. | Reference |
|---|---|---|---|---|
Pd2-001 | U19-CAGACTTGTCGGAATGAAAGC | TTTTGTTTATAAGTCGATACAATGCA | DQ684672 | Starger et al.21 |
Pd3-002* | U19-ATCCGAATACAAGCGAAACG | CAAAGCTTCTATCAGAAAATGCAA | DQ684673 | Starger et al.21 |
Pd2-003* | U19-CCTCTTCCTGTTTGGGCTCT | TCTGCATTACGTTTGTTTGACA | DQ684674 | Starger et al.21 |
Pd3-004 | U19-ACCAGACAGAAACACGCACA | GCAATGTGTAACAGAGGTGGAA | DQ684675 | Starger et al.21 |
Pd3-005 | U19-AGAGTGTGGACAGCGAGGAT | GTTCCTTCGCCTTCGATTTT | DQ684676 | Starger et al.21 |
Pd2-006 | U19-ATCTCCATGTGATCGGCATT | GTTCCCCCAGCTGAGAAGTT | DQ684677 | Starger et al.21 |
Pd2-007 | U19-AAGAAGGTGTGGTATTTCAGAGGG | GGTGGATAAAGTATTTCTCACTCTTGG | EF120462 | Starger et al.21 |
Pd3-008 | AGTTGAGGTTGTTGAAACATG | U19-TCCATGCAGAACCCC | EF120463 | Starger et al.21 |
Pd3-009 | U19-CCAATGCGTCCGTAGCTCTC | ATCACCTAAAAATTTCAGTCCCTTACC | EF120464 | Starger et al.21 |
Pd3-010* | U19-CTGATCAACAAACTGGGAGGC | TCATTAGAAATCATCTTGATTTGATAAGG | EF120465 | Starger et al.21 |
PV2 | U19-CCAGGACCCATTTATACTCC | TGCAGTGTTCTACTTGTCAGTGC | AY397777 | Magalon et al.20 |
PV3* | U19-TGAAACAGGATTGACGACGA | AACCCGAATGATTCCACAAT | AY397778 | Magalon et al. (unpublished) |
PV5* | U19-GTCATCACGCAAAGTTCC | GAATAGCCTGCGTTTATTTGG | AY397780 | Magalon et al.20 |
PV6* | U19-CTTTCCCGACCAGTTTAGGG | AGCCGTTCAGCTACCTATGG | AY397781 | Magalon et al.20 |
PV7 | U19-GAGATGGATGGAGACTGC | GGTATCTCTGTGCTCAGTTCTTTG | AY397782 | Magalon et al.20 |
Pd2-AB79 (from PV7) | GGAGATGGATGGAGACTGCT | U19-AGTGCACGCACTAGATAGA | AB214379 | Gorospe & Karl22 |
Pd3-EF65 (from Pd3-010) | U19-TGTGCAGGTGTTGTGACTGA | TGTCTTTTTCACTTTTGCTTCAA | EF120465 | Gorospe & Karl22 |
Pd4 | U19-ACGCACACAAACCAACAAAC | TAATTCCATCAACTCAAAGGGG | Not found | Torda et al.8 |
Pd11 | TCGTTTGAAGGGAAATGCTC | U19-GCATGCTATGTATGCGAGA | Not found | Torda et al.8 |
Pd13 | TGTTCCTCTCTTTCTCTCTTCCA | U19-CATTTATGTTCCTTTCACGGC | Not found | Torda et al.8 |
Poc40 | U19-TTATTATATGGGTGTATGC | CTCAAAGTGCGATTAAAGCC | Not found | Pinzón & Lajeunesse13 |
