Figure 5
From: Post-hypoxia Invasion of the fetal brain by multidrug resistant Staphylococcus
Circular map alignment of the genomes from S. simulans strains MR3 (from brain) and MR4 (from placenta). Alignment identity calculations were performed using the nucleotide BLAST algorithm implemented through BRIG. The inner black ring represents GC content for the sequences. Percent identity between the sequences is color coded at three percentage levels as shown in the legend (red for MR3, blue for MR4). Antibiotic resistance genes and their locations, as predicted by RAST, surround the map in green and are consistent between the genomes. Within the graphic is the average nucleotide identity between the genomes. Sequence identity is displayed as both a percent and a bit-score distribution. Calculations were performed in 1 kb windows, both one and two way, with a 95% identity threshold.
