Table 1 Summary of GP calculation for major repeats in WGS data sets with various genome coverage of P. ginseng cv. Chunpoong.

From: Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax

Amount of WGS (Mbp)

0.18

0.36

3.6

36

360

1,800

3,600

18,000

36,000

CV (%)a

Genome coverage

0.00005x

0.0001x

0.001x

0.01x

0.1x

0.5x

1x

5x

10x

PgDel1

21.82

23.79

24.1

23.75

24.11

21.9

24.23

24.09

24.06

3.23

PgDel2

2.09

2.27

2.51

2.71

2.62

2.45

2.64

2.65

2.65

5.66

PgDel3

3.17

2.84

2.51

2.52

2.61

2.53

2.59

2.6

2.6

4.04

PgTat1

9.93

6.36

5.92

6.05

5.89

6.56

6.05

6.04

6.03

3.75

PgTat2

0.54

0.64

0.64

0.7

0.7

0.9

0.72

0.72

0.72

11.29

PgAthila

0.54

1.34

1.43

1.32

1.44

1.47

1.45

1.43

1.43

3.80

PgTork

0.51

1.24

1.14

1.29

1.24

0.97

1.23

1.21

1.22

8.31

PgOryco

0

0.07

0.09

0.1

0.11

0.09

0.1

0.1

0.11

13.53

PgTR

1.57

1.18

1.07

1.11

1.2

2.06

1.16

1.19

1.21

25.29

45 S rDNA

0.54

0.73

0.7

0.7

0.76

1.99

0.66

0.75

0.75

51.11

Total

40.71

40.47

40.09

40.24

40.68

40.92

40.85

40.79

40.77

0.75

  1. aCV: coefficient of variation. CV values were calculated for the GP values using 0.0001x-10x genome coverage WGS, except the GP for 0.00005x.
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