Table 2 Association of different genotypes of SNPs in SIX1 with body measurements in Qinchuan cattle.

From: NRF1 and ZSCAN10 bind to the promoter region of the SIX1 gene and their effects body measurements in Qinchuan cattle

Locus

Genotypes

BL (cm)

WH (cm)

CD (cm)

CC (cm)

BF (cm)

ULA (cm2)

IMF (%)

g. −85 G > T

GG (189)

130.877 ± 0.601

118.907 ± 0.417

57.783 ± 0.422

164.772 ± 0.963a

0.879 ± 0.019

45.588 ± 0.742

7.627 ± 0.051A

GT (175)

132.174 ± 0.625

118.629 ± 0.433

57.971 ± 0.439

162.054 ± 1.001

0.860 ± 0.020

44.695 ± 0.771

7.644 ± 0.073A

TT (63)

133.056 ± 1.041

120.722 ± 0.722

58.444 ± 0.731

160.333 ± 1.668b

0.878 ± 0.033

43.073 ± 1.286

6.118 ± 0.153B

 

P

0.071

0.165

0.469

0.029

0.507

0.303

0.000

g. −63 G > A

GG (266)

130.164 ± 0.483B

118.318 ± 0.346

56.985 ± 0.793b

159.032 ± 0.016Bb

0.840 ± 0.016b

44.488 ± 0.627

7.621 ± 0.066

GA (132)

133.043 ± 0.686B

119.697 ± 0.491

58.841 ± 0.487b

163.250 ± 1.126b

0.825 ± 0.023b

45.513 ± 0.889

7.527 ± 0.069

AA (30)

139.850 ± 1.438 A

122.883 ± 1.029

62.600 ± 1.022a

168.033 ± 1.362Aa

0.911 ± 0.048a

45.283 ± 1.866

7.247 ± 0.114

 

P

0.000

0.058

0.013

0.005

0.028

0.374

0.062

  1. Values are shown as the means ± standard error. Values with different superscripts in the same column differ significantly at P < 0.05 (a,b) and P < 0.01 (A,B) after Bonferroni correction. Body length (BL),withers height (WH), chest depth (CD), chest circumference (CC), back fat thickness (BF), ultrasound loin muscle area (ULA) and intramuscular fat content (IFC).