Table 3 Performance effect of CPU frequency scaling in the HaplotypeCaller.
From: Accelerating next generation sequencing data analysis with system level optimizations
GATK version | Type of CPU frequency scaling | HaplotypeCaller execution time (in Hours) | Power (in KWh) |
|---|---|---|---|
GATK 3.3_src | Performance | 2.51 | 1.34 |
On-demand | 3.72 | 0.47 | |
GATK 3.7_src | Performance | 1.14 | 0.59 |
On-demand | 1.49 | 0.19 |
